Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
RC1_0945TonB-dependent siderophore receptor, putative; Identified by match to protein family HMM PF01136. (712 aa)    
Predicted Functional Partners:
RC1_0946
PepSY-associated membrane protein; Identified by match to protein family HMM PF01136; one gene withORF00936.
 
     0.947
RC1_2946
TonB-dependent receptor, putative; Identified by match to protein family HMM PF06769 match to protein family HMM TIGR02116.
  
   
 0.848
RC1_3920
TonB dependent receptor, putative; Identified by match to protein family HMM PF01011.
  
  
 0.830
btuB-2
Vitamin B12 transporter btuB precursor, putative; Gene symbol synonyms.
  
   
 0.816
RC1_3723
TonB-dependent receptor, putative.
  
   
 0.751
RC1_3821
Outer membrane efflux protein; Identified by match to protein family HMM PF00005 match to protein family HMM PF00664.
   
  
 0.658
lamB
Maltoporin; Gene symbol synonym.
      
 0.656
malG
Maltose transport system permease protein malG, putative; Identified by match to protein family HMM PF03206.
      
 0.656
malK
Maltose; Identified by match to protein family HMM PF01012; Belongs to the ABC transporter superfamily.
      
 0.656
RC1_3809
PepSY-associated TM helix, putative; Identified by match to protein family HMM PF00908 match to protein family HMM TIGR01221.
 
   
 0.655
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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