Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0965Conserved hypothetical protein; Identified by match to protein family HMM PF00072. (166 aa)    
Predicted Functional Partners:
RC1_0834
Conserved hypothetical protein; Identified by match to protein family HMM PF01381.
 
  
 0.969
RC1_2689
Manganese containing catalase, putative; Also called pseudocatalase; identified by match to protein family HMM PF01043 match to protein family HMM PF02810 match to protein family HMM PF07516 match to protein family HMM PF07517 match to protein family HMM TIGR00963.
 
    0.912
RC1_1523
Conserved hypothetical protein; Identified by match to protein family HMM PF00701 match to protein family HMM TIGR00674.
 
  
 0.576
kat
Catalase; Identified by match to protein family HMM PF00444 match to protein family HMM TIGR01022.
  
    0.541
katA
Catalase; Gene symbol synonym catA; identified by match to protein family HMM PF00430.
  
    0.541
RC1_0964
Conserved hypothetical protein.
       0.504
RC1_2649
Zinc-type alcohol dehydrogenase, putative.
 
    0.464
RC1_2468
Streptomyces cyclase; Identified by match to protein family HMM PF00355 match to protein family HMM TIGR01409 match to protein family HMM TIGR01416.
 
    0.430
lig
ATP dependent DNA ligase domain protein; Identified by match to protein family HMM PF00675 match to protein family HMM PF05193.
 
    0.404
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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