Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dgtDeoxyguanosinetriphosphate triphosphohydrolase, putative. (440 aa)    
Predicted Functional Partners:
surE-2
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.923
RC1_3756
Conserved hypothetical protein; Identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229.
  
 
  0.916
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.911
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
  0.901
nrdD
Anaerobic ribonucleoside-triphosphate reductase; Pseudogene;identified by match to protein family HMM PF00005.
    
  0.900
RC1_1023
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF02355 match to protein family HMM PF07549 match to protein family HMM TIGR00916 match to protein family HMM TIGR00966 match to protein family HMM TIGR01129; Belongs to the HesB/IscA family.
     
 0.697
argS
TIGR00456 PF00750: arginyl-tRNA synthetase With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00376.
  
  
 0.607
tonB-4
Protein TonB, putative; Identified by match to protein family HMM PF00278 match to protein family HMM PF02784.
       0.588
RC1_1027
Beta-glucosidase-like protein.
       0.588
RC1_1028
Peptidase M50 family, putative; Identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028.
       0.588
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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