close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1027Beta-glucosidase-like protein. (349 aa)    
Predicted Functional Partners:
RC1_0396
Chitinase class II protein, putative; Identified by match to protein family HMM PF00326 match to protein family HMM PF02129; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.901
tonB-4
Protein TonB, putative; Identified by match to protein family HMM PF00278 match to protein family HMM PF02784.
 
    0.867
scpA
Segregation and condensation protein A, putative; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
    0.849
RC1_1028
Peptidase M50 family, putative; Identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028.
       0.842
argS
TIGR00456 PF00750: arginyl-tRNA synthetase With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00376.
  
    0.824
RC1_4100
Conserved hypothetical protein; Identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509.
 
  
 0.768
RC1_2060
Hypothetical protein; Identified by Glimmer2 putative.
  
  
 0.732
scpB
Segregation and condensation protein B, putative; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
    0.726
dgt
Deoxyguanosinetriphosphate triphosphohydrolase, putative.
       0.635
anmK
Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
   
 0.625
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.