STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpBSegregation and condensation protein B, putative; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (202 aa)    
Predicted Functional Partners:
scpA
Segregation and condensation protein A, putative; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
cmk
Cytidylate kinase.
 
  
 0.887
smc
SMC family protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 
 0.863
der
GTP-binding protein, putative; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.794
RC1_3597
RNA pseudouridine synthase, putative; Identified by match to protein family HMM PF00144; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.777
rluE
Ribosomal large subunit pseudouridine synthase E; [synonyms] rRNA-uridine isomerase E rRNA pseudouridylate synt Hase E identified by match to protein family HMM PF00309 match to protein family HMM PF04552 match to protein family HMM PF04963 match to protein family HMM TIGR02395; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.772
RC1_1027
Beta-glucosidase-like protein.
  
    0.726
tonB-4
Protein TonB, putative; Identified by match to protein family HMM PF00278 match to protein family HMM PF02784.
       0.721
RC1_1028
Peptidase M50 family, putative; Identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028.
       0.721
argS
TIGR00456 PF00750: arginyl-tRNA synthetase With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00376.
  
    0.717
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.