Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1111Terminase small subunit; Part of the putative prophage RcenMu genome; similar to phage Mu genome; similar to phage Mu genome. (180 aa)    
Predicted Functional Partners:
RC1_1112
Terminase large subunit; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.951
RC1_1113
F, portal protein; Part of the putative prophage RcenMu genome; identified by match to protein family HMM PF06252; similar to phage Mu genome.
 
    0.946
RC1_1110
E or D; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.944
RC1_1114
Virion morphogenesis late F orf; Part of the putative prophage RcenMu genome.
 
     0.944
gemA
GemA, modulation of host genes; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.885
RC1_1120
G; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.852
RC1_1106
Phage-related conserved hypothetical protein; Part of the putative prophage RcenMu genome.
 
     0.832
mor
Mor, transcription regulation; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.831
RC1_1092
Phage transposition protein B; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.808
RC1_1099
Hypothetical protein; Gp05species of closest match: Burkhol.
 
     0.793
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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