STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1117Part of the putative prophage RcenMu genome. (308 aa)    
Predicted Functional Partners:
RC1_1115
Phage-related conserved hypothetical protein; Part of the putative prophage RcenMu genome.
 
     0.942
RC1_1120
G; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.903
RC1_1113
F, portal protein; Part of the putative prophage RcenMu genome; identified by match to protein family HMM PF06252; similar to phage Mu genome.
 
     0.866
RC1_1114
Virion morphogenesis late F orf; Part of the putative prophage RcenMu genome.
 
     0.863
RC1_1119
Phage-related J or K; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.825
gemA
GemA, modulation of host genes; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.810
RC1_1112
Terminase large subunit; Part of the putative prophage RcenMu genome; similar to phage Mu genome.
 
     0.805
RC1_1489
Phage-related conserved hypothetical protein; Identified by match to protein family HMM PF07568.
 
     0.772
RC1_1116
Phage-related conserved hypothetical protein; Part of the putative prophage RcenMu genome; identified by match to protein family HMM PF05838.
       0.771
RC1_1123
Phage tail sheath protein; Part of the putative prophage RcenMu genome.
 
     0.766
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.