STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1152OsmC. (405 aa)    
Predicted Functional Partners:
RC1_1151
Conserved hypothetical protein; Identified by match to protein family HMM PF00078.
       0.589
RC1_1153
Hypothetical protein; Identified by Glimmer2 putative.
       0.584
RC1_2578
Transcriptional regulator, AraC family protein.
  
  
 0.553
RC1_3714
Conserved domain protein; Identified by match to protein family HMM PF05082.
  
    0.490
ilvA
Threonine dehydratase; Identified by match to protein family HMM PF00830 match to protein family HMM TIGR00009.
  
    0.465
RC1_0902
Conserved hypothetical protein; Identified by match to protein family HMM PF01313 match to protein family HMM TIGR01402.
 
     0.460
RC1_1148
Acetyltransferase, GNAT family.
       0.445
sseA
3-mercaptopyruvate sulfurtransferase; [Synonyms] Rhodanese-like protein.
       0.445
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase, putative; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.443
metC
Cystathionine beta-lyase.
       0.442
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.