STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1180[contains] EAL domain, region 9-239; diguanylate cyclase (GGDEF) domain, region 401-562; identified by match to protein family HMM PF00144 match to protein family HMM PF00768 match to protein family HMM PF07943. (587 aa)    
Predicted Functional Partners:
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
  
 0.921
RC1_3033
Sensor protein torS, putative.
  
  
 0.921
RC1_3923
Diguanylate cyclase, putative; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF00989 match to protein family HMM TIGR00229.
 
 
0.912
RC1_1779
Response regulator receiver domain protein; Identified by match to protein family HMM PF04055 match to protein family HMM PF06463 match to protein family HMM TIGR02666.
  
  
 0.898
RC1_0957
Sensory box-containing diguanylate cyclase, putative; Contains GAF domain.
 
 
0.893
RC1_3358
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative; Contains EAL domain and GGDEF domain.
 
 
0.892
RC1_3432
Diguanylate cyclase, putative; Contains TIGRO00254 and PF00990; identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229.
 
 
 0.887
RC1_1492
Diguanylate cyclase, putative; Contains EAL domain and GGDEF domain; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786.
 
 
0.876
RC1_1483
Sensory box protein, putative; Contains TIGR00229.
 
 
 0.866
RC1_3448
Diguanylate cyclase, putative.
 
 
0.861
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.