STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1332SmpA; Identified by match to protein family HMM PF03061 match to protein family HMM TIGR00369. (155 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.958
RC1_1402
PQQ enzyme repeat family protein; Identified by match to protein family HMM PF00160.
  
 
 
 0.956
bamD
Tetratricopeptide repeat family protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.939
RC1_1330
Conserved hypothetical protein.
 
     0.790
ostA
Organic solvent tolerance protein OstA, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.783
RC1_2141
Conserved hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.760
RC1_2004
Conserved hypothetical protein; Identified by match to protein family HMM PF01145 match to protein family HMM TIGR01933.
  
   
 0.731
RC1_2550
Conserved hypothetical protein.
  
     0.730
RC1_2601
Conserved hypothetical protein; Identified by match to protein family HMM PF00165 match to protein family HMM PF02311 match to protein family HMM PF07883.
  
     0.727
RC1_2552
Conserved hypothetical protein; Identified by match to protein family HMM PF00294 match to protein family HMM PF01467 match to protein family HMM TIGR00125 match to protein family HMM TIGR02198 match to protein family HMM TIGR02199.
  
     0.706
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.