STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1348enoyl-CoA hydratase; Identified by match to protein family HMM PF03030 match to protein family HMM TIGR01104. (364 aa)    
Predicted Functional Partners:
mmsB
3-hydroxyisobutyrate dehydrogenase; Identified by match to protein family HMM PF04355; Belongs to the HIBADH-related family.
  
 0.985
gcdH
glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00106 match to protein family HMM PF01370.
 
  0.956
ivd2
isovaleryl-CoA dehydrogenase; Identified by match to protein family HMM PF00108 match to protein family HMM PF02803 match to protein family HMM TIGR01930.
 
  0.956
RC1_0378
acyl-CoA dehydrogenase.
 
  0.955
hbd
[Synonyms] Beta-hydroxybutyryl-CoA dehydrogenase.
 0.952
RC1_1018
acyl-CoA dehydrogenase, putative.
  
  0.950
RC1_3580
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF01569.
  
 0.945
mccA
[synonyms] 3-methylcrotonyl-CoA carboxylase biotin-containing subunit identified by match to protein family HMM PF00682.
  
 0.927
RC1_0547
Peroxisomal bifunctional enzyme; [synonyms] PBE PBFE [Includes] Enoyl-CoA hydratase 3,2-trans-enoyl-CoA isomerase 3-hydroxyacyl-CoA dehydrogenase identified by match to protein family HMM PF00015 match to protein family HMM PF00672; Belongs to the enoyl-CoA hydratase/isomerase family.
0.927
fadJ
Fatty acid oxidation complex alpha subunit; [includes] Enoyl-CoA hydratase 3-hydroxyacyl-CoA dehydrogenase 3-hydroxybutyryl-CoA epimerase identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02392 match to protein family HMM TIGR02937.
0.927
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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