STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betBBetaine aldehyde dehydrogenase; Identified by match to protein family HMM PF00464 match to protein family HMM PF01212; Belongs to the aldehyde dehydrogenase family. (499 aa)    
Predicted Functional Partners:
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.945
RC1_3030
acetyl-CoA synthetase, putative; Identified by match to protein family HMM PF03562 match to protein family HMM PF06725.
  
 0.945
fadJ
Fatty acid oxidation complex alpha subunit; [includes] Enoyl-CoA hydratase 3-hydroxyacyl-CoA dehydrogenase 3-hydroxybutyryl-CoA epimerase identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02392 match to protein family HMM TIGR02937.
  
 0.933
adhC
Alcohol dehydrogenase class III; Also called S-(hydroxymethyl)glutathione dehydrogenase and Glutathione-dependent formaldehyde dehydrogenase; identified by match to protein family HMM PF02615; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 
 0.929
mmsB
3-hydroxyisobutyrate dehydrogenase; Identified by match to protein family HMM PF04355; Belongs to the HIBADH-related family.
  
 
 0.929
RC1_3355
Oxidoreductase, zinc-binding dehydrogenase family.
  
 
 0.923
RC1_2325
Long-chain-fatty-acid--CoA ligase, putative; Long-chain acyl-CoA synthetase identified by match to protein family HMM PF02575 match to protein family HMM TIGR00103.
  
 0.918
RC1_0310
succinyl-CoA transferase.
  
 
 0.917
puuC
Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase.
  
  
 
0.912
RC1_3921
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF00015 match to protein family HMM PF00989 match to protein family HMM TIGR00229.
    
 0.912
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.