STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ostAOrganic solvent tolerance protein OstA, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (747 aa)    
Predicted Functional Partners:
RC1_3201
Conserved hypothetical protein; Identified by match to protein family HMM PF02152 match to protein family HMM TIGR00525 match to protein family HMM TIGR00526.
 
 
 0.969
RC1_1563
Peptidyl-prolyl cis-trans isomerase family protein, putative; PF00639Several uncharacterized homologs from the same family; Found in the same cluster With putative proteins from the same family.
 
  
 0.873
RC1_1565
Predicted permease YjgP.
 
  
 0.797
RC1_1332
SmpA; Identified by match to protein family HMM PF03061 match to protein family HMM TIGR00369.
  
  
 0.783
RC1_1564
Predicted permease YjgP; Identified by match to protein family HMM PF01928.
 
  
 0.773
RC1_3200
Conserved hypothetical protein; Identified by match to protein family HMM PF00924.
 
   
 0.772
RC1_2604
Helicase, UvrD; Identified by match to protein family HMM PF00849; Belongs to the helicase family. UvrD subfamily.
  
     0.736
bamA
Outer membrane protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.733
RC1_0509
Conserved hypothetical protein; Identified by match to protein family HMM PF00582.
  
     0.695
RC1_4097
Conserved hypothetical protein; Identified by match to protein family HMM PF00456 match to protein family HMM PF02779 match to protein family HMM PF02780 match to protein family HMM TIGR00232.
  
    0.689
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.