STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1404Conserved hypothetical protein; Identified by match to protein family HMM PF00460 match to protein family HMM PF06429 match to protein family HMM TIGR02488. (184 aa)    
Predicted Functional Partners:
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF03180; Belongs to the phosphoglycerate kinase family.
      0.697
RC1_1402
PQQ enzyme repeat family protein; Identified by match to protein family HMM PF00160.
     
 0.526
der
GTP-binding protein, putative; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.523
RC1_1403
Conserved hypothetical protein; Identified by match to protein family HMM PF00460.
       0.519
RC1_1405
Two-component transcriptional regulator, putative; Identified by match to protein family HMM PF03240 match to protein family HMM TIGR01409.
       0.504
RC1_2756
Protease II, ptrB, putative; PF02897 PF00326: prolyl oligopeptidase family; With a good score above the trusted cutoff and uncharacterized homologs.
 
      0.433
RC1_0638
Conserved hypothetical protein.
  
     0.412
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.