STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otsBTrehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (272 aa)    
Predicted Functional Partners:
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
 
 0.999
treS
Trehalose synthase; Identified by match to protein family HMM PF00633 match to protein family HMM PF00730 match to protein family HMM TIGR01084.
 
 0.974
RC1_1957
Conserved hypothetical protein; Identified by match to protein family HMM PF00043 match to protein family HMM PF02798.
   
    0.960
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.820
fbaB
Fructose-bisphosphate aldolase, class I; Identified by match to protein family HMM PF00004 match to protein family HMM PF05491 match to protein family HMM PF05496 match to protein family HMM PF07728 match to protein family HMM TIGR00635.
   
    0.797
kat
Catalase; Identified by match to protein family HMM PF00444 match to protein family HMM TIGR01022.
   
  
 0.745
katA
Catalase; Gene symbol synonym catA; identified by match to protein family HMM PF00430.
   
  
 0.745
treZ
Probable maltokinase; Identified by match to protein family HMM PF00124 match to protein family HMM TIGR01157; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.713
RC1_3552
Protein prkA, putative; Identified by match to protein family HMM PF05013.
   
    0.700
RC1_0046
Conserved hypothetical protein.
    
 0.696
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.