STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1414Probable ATPase; [contains]tetratricopeptide repeat identified by Glimmer2 putative. (493 aa)    
Predicted Functional Partners:
RC1_0046
Conserved hypothetical protein.
  
 0.985
RC1_1917
TPR domain protein; Identified by match to protein family HMM PF03807 match to protein family HMM TIGR00112.
  
 0.984
RC1_2437
Hypothetical protein; Identified by Glimmer2 putative.
    
 0.973
alkJ
Alcohol dehydrogenase (acceptor); Identified by match to protein family HMM PF00550 match to protein family HMM TIGR00517.
    
 0.968
RC1_2341
Membrane protein, putative; Identified by match to protein family HMM PF03741.
    
 0.968
RC1_2224
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
 
 
 0.965
RC1_1310
Conserved hypothetical protein.
 
 
 0.964
RC1_3492
Conserved hypothetical protein.
   
 0.958
RC1_3349
Sensor histidine kinase, putative; Contains PF02518.
  
 0.953
hrpB
ATP-dependent helicase protein, putative; Identified by match to protein family HMM PF01112.
    
 0.940
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.