STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1434Conserved hypothetical protein. (248 aa)    
Predicted Functional Partners:
RC1_1435
Conserved hypothetical protein; Identified by match to protein family HMM PF00146.
 
     0.621
RC1_3409
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.615
RC1_2939
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.578
RC1_1750
Conserved hypothetical protein.
  
     0.558
RC1_2470
Conserved hypothetical protein.
  
     0.541
RC1_1436
Hypothetical protein; Identified by Glimmer2 putative.
 
     0.519
RC1_4077
Conserved hypothetical protein; Identified by match to protein family HMM PF07045.
  
     0.518
RC1_1839
Conserved hypothetical protein; Identified by match to protein family HMM PF01791.
  
     0.504
RC1_2603
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.499
RC1_1433
Response regulator receiver domain protein; Identified by match to protein family HMM PF00361.
       0.473
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.