STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1436Hypothetical protein; Identified by Glimmer2 putative. (294 aa)    
Predicted Functional Partners:
pufC
Photosynthetic reaction center cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
   
 
 0.898
pufL
Photosynthetic reaction center L subunit; Identified by match to protein family HMM PF03209 match to protein family HMM PF07690; Belongs to the reaction center PufL/M/PsbA/D family.
   
 
 0.880
pufM
Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
 
 0.880
rbn-2
Identified by match to protein family HMM PF00575.
 
    0.867
pufA
Light-Harvesting I Complex, alpha subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
 
 0.848
pufB
Light-Harvesting I Complex, beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
    
 
 0.846
RC1_0498
Conserved hypothetical protein; Identified by match to protein family HMM PF00005 match to protein family HMM TIGR01978.
 
    0.786
RC1_0497
Conserved hypothetical protein; Identified by match to protein family HMM PF01458 match to protein family HMM TIGR01981.
 
     0.767
RC1_0496
Conserved hypothetical protein; Identified by match to protein family HMM PF00266 match to protein family HMM PF01212 match to protein family HMM TIGR01979.
  
     0.764
RC1_2048
Conserved hypothetical protein; Identified by match to protein family HMM PF07103.
   
  
 0.712
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.