STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1439TRAP transporter solute receptor, TAXI family protein. (344 aa)    
Predicted Functional Partners:
RC1_1440
Lipoprotein, putative; Identified by match to protein family HMM PF00072.
       0.707
RC1_1441
Conserved hypothetical protein.
       0.707
metN
D-methionine transport ATP-binding protein MetN; Gene symbol synonym.
       0.688
RC1_1443
ABC transporter, permease protein, putative; GB identified by match to protein family HMM PF01209.
       0.686
RC1_1430
AcrB; Identified by match to protein family HMM PF07719; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.557
hrpB
ATP-dependent helicase protein, putative; Identified by match to protein family HMM PF01112.
       0.553
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.511
RC1_1429
Contains TIGR01730 identified by match to protein family HMM PF01979 match to protein family HMM TIGR00221; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.443
RC1_3958
Integral membrane protein, putative; Identified by match to protein family HMM PF01103 match to protein family HMM PF07244.
  
     0.424
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.