Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_1502Conserved hypothetical protein. (233 aa)    
Predicted Functional Partners:
RC1_1503
uracil-DNA glycosylase superfamily.
       0.822
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.794
RC1_3952
Conserved hypothetical protein; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715.
  
     0.638
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; [synonyms] 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase identified by match to protein family HMM PF02316.
  
    0.632
rpoZ
DNA-directed RNA polymerase, omega subunit, putative; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
   0.592
holC
DNA polymerase III, chi subunit, HolC, putative; Identified by match to protein family HMM PF01066.
  
     0.458
RC1_1499
Guanosine polyphosphate phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.456
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
   
 0.446
RC1_0375
Conserved hypothetical protein; Identified by match to protein family HMM PF00430.
  
     0.433
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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