STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1546Adenylate cyclase, putative; Identified by match to protein family HMM PF01131 match to protein family HMM PF01396 match to protein family HMM PF01751 match to protein family HMM TIGR01051. (532 aa)    
Predicted Functional Partners:
sixA
Phosphohistidine phosphatase SixA, putative; Identified by match to protein family HMM PF02481 match to protein family HMM TIGR00732.
       0.683
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
     
 0.658
RC1_1543
Ppx; Identified by match to protein family HMM PF01979 match to protein family HMM PF07969 match to protein family HMM TIGR00857.
 
     0.579
RC1_1631
Conserved hypothetical protein; Identified by match to protein family HMM PF03070.
  
     0.444
hdpA
Hybrid phosphotransfer protein, HdpA; [contains] response regulator receiver domain; PAS domain S-box; identified by match to protein family HMM PF00072 match to protein family HMM PF01339.
     
 0.418
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
     
 0.418
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
     
 0.418
RC1_3342
Complexhybrid Signal Transduction Protein.
     
 0.418
ppk2
polyP-AMP phosphotransferase.
 
     0.416
RC1_2937
Conserved hypothetical protein.
  
     0.412
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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