STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1550Conserved hypothetical protein; Identified by match to protein family HMM PF00471 match to protein family HMM TIGR01023. (479 aa)    
Predicted Functional Partners:
RC1_1548
Permease protein, putative; Identified by match to protein family HMM PF00575 match to protein family HMM PF00773 match to protein family HMM TIGR00358 match to protein family HMM TIGR02063.
       0.842
RC1_1549
CDP-alcohol phosphatidyltransferase, putative; Identified by match to protein family HMM PF00595 match to protein family HMM PF03572 match to protein family HMM TIGR00225; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.842
RC1_1547
Conserved hypothetical protein; Belongs to the DnaA family.
 
     0.837
RC1_2470
Conserved hypothetical protein.
  
     0.764
RC1_0787
Probable DNA polymerase III; Identified by match to protein family HMM PF00291.
  
     0.736
hly
21 kDa hemolysin protein, putative; Identified by match to protein family HMM PF00753.
  
     0.710
purM
Phosphoribosylformylglycinamidine cyclo-ligase; Phosphoribosyl-aminoimidazole synthetase identified by match to protein family HMM PF00072 match to protein family HMM PF00990 match to protein family HMM TIGR00254.
       0.697
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.697
tonB-4
Protein TonB, putative; Identified by match to protein family HMM PF00278 match to protein family HMM PF02784.
  
     0.695
RC1_3200
Conserved hypothetical protein; Identified by match to protein family HMM PF00924.
  
     0.688
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.