STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1625Bacterioferritin comigratory protein, putative; Identified by match to protein family HMM PF03922. (159 aa)    
Predicted Functional Partners:
glnE
Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
      0.940
RC1_1623
Conserved hypothetical protein; Identified by match to protein family HMM PF05960.
       0.651
flgC
Flagellar basal-body rod protein FlgC, putative; Part of the proximal rod With fliE and flgB; Belongs to the flagella basal body rod proteins family.
    
   0.618
flgC-2
Flagellar basal-body rod protein FlgC; Part of the hook-basal body (HBB) complex of the bacterial flagella.Component of the proximal rod transmission shaft With fliE and flgB; Located in the periplasmic space.
    
   0.618
RC1_1984
Mrp protein, putative; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.535
ilvE-2
Branched-chain-amino-acid aminotransferase, putative; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
    0.513
ahpC
Alkyl hydroperoxide reductase C; Identified by match to protein family HMM PF02669 match to protein family HMM TIGR00681.
 
 
0.511
RC1_0268
Conserved hypothetical protein; [contains] ACT domain identified by match to protein family HMM PF01266.
  
    0.453
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.