STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1731Transposase, putative. (170 aa)    
Predicted Functional Partners:
RC1_1730
Transposase and inactivated derivative; No HMMs, but Has some uncharacterized homologs identified as transposons.
    0.867
RC1_0483
Transposase and inactivated derivative; Identified by match to protein family HMM PF00266 match to protein family HMM PF01212.
    0.767
RC1_1690
Transposase and inactivated derivatives; Identified by match to protein family HMM PF01546 match to protein family HMM PF04389.
    0.767
RC1_2731
Transposase and inactivated derivative; No HMMs, but some uncharacterized homologs identified as transposase; identified by match to protein family HMM PF00497.
    0.767
RC1_3675
Transposase and inactivated derivative; Identified by match to protein family HMM PF02622.
    0.767
RC1_1729
Hypothetical protein; Identified by Glimmer2 putative.
       0.430
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.