STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1825Conserved hypothetical protein; Identified by match to protein family HMM PF01709 match to protein family HMM TIGR01033. (320 aa)    
Predicted Functional Partners:
RC1_1790
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.685
RC1_3409
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.617
RC1_2549
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.605
RC1_3655
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.561
RC1_1823
tRNA synthetases class II (D, K and N) subfamily, putative; PF00152With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00633 match to protein family HMM PF01330 match to protein family HMM PF07499 match to protein family HMM TIGR00084.
       0.553
RC1_0222
DNA-binding protein (HTH domain), putative; Identified by match to protein family HMM PF03240.
  
     0.526
RC1_0600
Conserved hypothetical protein; Identified by match to protein family HMM PF00106 match to protein family HMM PF01370.
  
     0.499
RC1_3880
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.497
RC1_1665
HAMP domain protein; Identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172.
  
     0.479
RC1_3109
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.477
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.