STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFHigh-affinity branched-chain amino acid transport ATP-binding protein LivF; Part of the liv operon; identified by match to protein family HMM PF00456 match to protein family HMM PF02779 match to protein family HMM PF02780 match to protein family HMM TIGR00232. (239 aa)    
Predicted Functional Partners:
livM
High-affinity branched-chain amino acid transport system permease protein LivM; Gene symbol synonym Part of the liv operon; identified by match to protein family HMM PF00005; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
High-affinity branched-chain amino acid transport system permease protein LivH; Gene symbol synonym Part of the liv operon; identified by match to protein family HMM PF01061; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
livG
High-affinity branched-chain amino acid transport ATP-binding protein LivG; Part of the liv operon.
 
 
0.998
braC
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; Alternate name.
 
 
 0.991
braC-2
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; Alternate name identified by match to protein family HMM PF05673.
 
 
 0.991
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.628
fliM-2
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.628
RC1_3035
ABC-type branched-chain amino acid binding protein, putative; Identified by match to protein family HMM PF00155 match to protein family HMM PF01041 match to protein family HMM PF01053.
  
  
 0.621
efp
Translation elongation factor P efp; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.481
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
    0.419
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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