STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1847Conserved hypothetical protein; Identified by match to protein family HMM PF01132 match to protein family HMM PF08207 match to protein family HMM TIGR00038. (1041 aa)    
Predicted Functional Partners:
RC1_1721
Conserved hypothetical protein; Identified by match to protein family HMM PF00072 match to protein family HMM PF00196 match to protein family HMM PF04545.
 
    0.722
RC1_3081
Conserved hypothetical protein.
  
    0.692
RC1_2224
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
  
     0.681
RC1_1623
Conserved hypothetical protein; Identified by match to protein family HMM PF05960.
 
   
 0.667
tonB
Protein TonB, putative; Identified by match to protein family HMM PF03033 match to protein family HMM PF04101 match to protein family HMM TIGR01133.
  
     0.649
RC1_3109
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.647
RC1_3206
Conserved hypothetical protein; Identified by match to protein family HMM PF03767.
  
     0.646
RC1_1722
Conserved hypothetical protein.
  
     0.624
RC1_3896
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.622
RC1_2940
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.621
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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