STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1864Diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF05170. (353 aa)    
Predicted Functional Partners:
RC1_3432
Diguanylate cyclase, putative; Contains TIGRO00254 and PF00990; identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229.
 
 0.897
RC1_2290
Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00128 match to protein family HMM PF02922 match to protein family HMM TIGR02100.
 
 0.887
RC1_1539
Diguanylate cyclase, putative; Identified by match to protein family HMM PF02515.
  
 0.868
RC1_3923
Diguanylate cyclase, putative; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF00989 match to protein family HMM TIGR00229.
 
 
 0.856
RC1_2560
GGDEF domain protein; Identified by match to protein family HMM PF00534.
  
 0.851
RC1_2038
Diguanylate cyclase, putative; Identified by match to protein family HMM PF06258.
 
 
 
 0.822
RC1_3881
Diguanylate cyclase, putative; Contains PF00990.
 
  
 0.741
RC1_3168
Diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF02592 match to protein family HMM TIGR00697.
  
     0.713
RC1_1483
Sensory box protein, putative; Contains TIGR00229.
 
 
 0.654
RC1_3358
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative; Contains EAL domain and GGDEF domain.
 
 
0.636
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.