Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1900Conserved hypothetical protein. (133 aa)    
Predicted Functional Partners:
RC1_2138
Hydrolase, putative; Identified by match to protein family HMM PF00989 match to protein family HMM PF02954 match to protein family HMM TIGR00229 match to protein family HMM TIGR02040.
  
     0.651
RC1_1899
Conserved hypothetical protein; Identified by match to protein family HMM PF00271 match to protein family HMM PF02151 match to protein family HMM PF04851 match to protein family HMM TIGR00631.
 
     0.625
RC1_2601
Conserved hypothetical protein; Identified by match to protein family HMM PF00165 match to protein family HMM PF02311 match to protein family HMM PF07883.
  
     0.573
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
 
     0.556
RC1_1330
Conserved hypothetical protein.
  
     0.543
RC1_2618
Conserved hypothetical protein.
  
     0.528
RC1_2606
Acyltransferase, putative.
  
     0.497
RC1_1862
Conserved hypothetical protein; Identified by match to protein family HMM PF01734.
  
     0.492
RC1_2768
Conserved hypothetical protein; Identified by match to protein family HMM PF00483 match to protein family HMM TIGR02091.
  
     0.489
RC1_1903
Conserved hypothetical protein; Identified by match to protein family HMM PF01541 match to protein family HMM PF02151 match to protein family HMM TIGR00194.
       0.488
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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