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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1900Conserved hypothetical protein. (133 aa)    
Predicted Functional Partners:
RC1_2138
Hydrolase, putative; Identified by match to protein family HMM PF00989 match to protein family HMM PF02954 match to protein family HMM TIGR00229 match to protein family HMM TIGR02040.
  
     0.651
RC1_1899
Conserved hypothetical protein; Identified by match to protein family HMM PF00271 match to protein family HMM PF02151 match to protein family HMM PF04851 match to protein family HMM TIGR00631.
 
     0.646
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
 
     0.579
RC1_2601
Conserved hypothetical protein; Identified by match to protein family HMM PF00165 match to protein family HMM PF02311 match to protein family HMM PF07883.
  
     0.573
RC1_1330
Conserved hypothetical protein.
  
     0.543
RC1_2618
Conserved hypothetical protein.
  
     0.528
RC1_1903
Conserved hypothetical protein; Identified by match to protein family HMM PF01541 match to protein family HMM PF02151 match to protein family HMM TIGR00194.
       0.519
lgt
Prolipoprotein diacylglyceryl transferase, Lgt family, putative; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.513
rfaD
ADP-L-glycero-D-mannoheptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
       0.511
RC1_2606
Acyltransferase, putative.
  
     0.497
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.