Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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RC1_1920Glycosyl transferase, family 39; Also called dolichyl-phosphate-mannose-protein mannosyltransferase; identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM TIGR02197. (581 aa)    
Predicted Functional Partners:
RC1_1918
Glycosyl transferase, group 2 family protein.
 
  
 0.985
lpxB-2
lipid-A-disaccharide synthase, putative; Identified by match to protein family HMM PF04380.
 
     0.876
RC1_0152
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00501.
 
  
 0.817
RC1_2495
Glycosyl transferase, group 2 family protein.
 
  
 0.810
RC1_1921
Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01790 match to protein family HMM TIGR00544.
       0.727
htrB
Lipid A biosynthesis lauroyl acyltransferase, putative; Identified by match to protein family HMM PF01687 match to protein family HMM PF06574 match to protein family HMM TIGR00083.
 
   
 0.608
RC1_0150
Conserved hypothetical protein; Identified by match to protein family HMM PF01906.
 
  
 0.606
RC1_1917
TPR domain protein; Identified by match to protein family HMM PF03807 match to protein family HMM TIGR00112.
 
     0.576
fmt
methionyl-tRNA formyltransferase fmt; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.541
RC1_0533
Conserved hypothetical protein; Similarity to protein tyrosine.
  
     0.539
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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