Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RC1_1925CRISPR-associatedhD domain protein, putative; Identified by match to protein family HMM PF00156 match to protein family HMM TIGR01251. (885 aa)    
Predicted Functional Partners:
RC1_1927
CRISPR-associated protein, GSU0053 family; Identified by match to protein family HMM PF01195 match to protein family HMM TIGR00447.
 
  
 0.957
RC1_1929
CRISPR-associated protein Cas1.
 
  
 0.937
RC1_1928
CRISPR-associated protein, GSU0054 family.
 
  
 0.933
cas2
CRISPR-associated protein Cas2, putative; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.891
RC1_1926
Conserved hypothetical protein; Possibly CRISPR-associated identified by match to protein family HMM PF01386 match to protein family HMM TIGR00731.
  
    0.865
RC1_3337
CRISPR-associated protein, CT1975 family; Identified by match to protein family HMM PF00512 match to protein family HMM PF02518.
  
 
 0.823
RC1_3336
CRISPR-associated protein, CT1976 family; Identified by match to protein family HMM PF00912 match to protein family HMM TIGR02070.
  
 
 0.820
RC1_1924
Conserved hypothetical protein.
 
     0.814
RC1_3339
CRISPR-associated protein, CT1972 family.
  
 
 0.808
RC1_1665
HAMP domain protein; Identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172.
  
     0.750
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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