STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1942Conserved hypothetical protein. (179 aa)    
Predicted Functional Partners:
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00334.
  
 
 0.639
tdk
Thymidine kinase.
 
     0.588
RC1_1064
Conserved hypothetical protein.
  
    0.576
gdhA
NAD-glutamate dehydrogenase.
  
    0.522
RC1_1947
3-hydroxyacyl-CoA dehydrogenase, putative; Identified by match to protein family HMM TIGR02165.
 
  
 0.494
RC1_1941
Cell wall hydrolase; Identified by match to protein family HMM PF04339.
       0.482
RC1_3032
Oxidoreductase, short chain dehydrogenase; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783.
 
 
 
 0.446
RC1_0376
Hypothetical protein; Identified by Glimmer2 putative.
  
 
 0.434
RC1_0747
Conserved domain protein.
  
 
 0.434
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.434
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.