STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_19473-hydroxyacyl-CoA dehydrogenase, putative; Identified by match to protein family HMM TIGR02165. (781 aa)    
Predicted Functional Partners:
RC1_0397
acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00487; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.999
fadA
3-ketoacyl-CoA thiolase; [synonym] (Fatty oxidation complex beta subunit); Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.999
fadA-2
3-ketoacyl-CoA thiolase; [synonyms] (Fatty oxidation complex beta subunit); Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.999
RC1_3948
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.999
RC1_2505
3-oxoadipate CoA-transferase subunit B.
  
 0.965
RC1_2504
3-oxoadipate CoA-transferase subunit A; Identified by match to protein family HMM PF00753.
  
 
 0.957
RC1_1946
acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM TIGR02570.
 
 0.956
RC1_0547
Peroxisomal bifunctional enzyme; [synonyms] PBE PBFE [Includes] Enoyl-CoA hydratase 3,2-trans-enoyl-CoA isomerase 3-hydroxyacyl-CoA dehydrogenase identified by match to protein family HMM PF00015 match to protein family HMM PF00672; Belongs to the enoyl-CoA hydratase/isomerase family.
  
0.955
fadJ
Fatty acid oxidation complex alpha subunit; [includes] Enoyl-CoA hydratase 3-hydroxyacyl-CoA dehydrogenase 3-hydroxybutyryl-CoA epimerase identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02392 match to protein family HMM TIGR02937.
  
0.955
phbB
acetoacetyl-CoA reductase; Identified by match to protein family HMM PF04333.
  
 0.936
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.