Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_1950Identified by match to protein family HMM PF04241. (122 aa)    
Predicted Functional Partners:
nuoI
NADH-quinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
    0.627
fdxN
Ferredoxin 2[4Fe-4S], FdxN; Identified by match to protein family HMM PF02347.
  
    0.627
sdhC
Succinate dehydrogenase, cytochrome b556, putative; Synonym identified by match to protein family HMM PF02424 match to protein family HMM TIGR01409.
  
    0.624
nuoD
NADH-quinone oxidoreductase chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
    0.619
guaD
Guanine deaminase; Identified by match to protein family HMM PF00672.
   
  
 0.477
tadA
Cytidine and deoxycytidylate deaminase, putative; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
   
  
 0.477
RC1_1949
Transcriptional regulator, MerR family protein; Identified by match to protein family HMM TIGR01573.
     
 0.459
adhC
Alcohol dehydrogenase class III; Also called S-(hydroxymethyl)glutathione dehydrogenase and Glutathione-dependent formaldehyde dehydrogenase; identified by match to protein family HMM PF02615; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 
  
 0.458
bhbA
methylmalonyl-CoA mutase.
     
 0.451
RC1_2613
NADH dehydrogenase.
  
    0.446
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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