Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_1971Conserved hypothetical protein; Identified by match to protein family HMM PF00903. (617 aa)    
Predicted Functional Partners:
RC1_1972
Conserved hypothetical protein; Identified by match to protein family HMM PF00854 match to protein family HMM TIGR00924.
 
    
0.589
RC1_0403
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00027.
  
     0.570
RC1_0402
TonB dependent receptor, putative; Identified by match to protein family HMM PF00440.
  
     0.555
btuB-2
Vitamin B12 transporter btuB precursor, putative; Gene symbol synonyms.
  
     0.534
RC1_2752
Conserved hypothetical protein.
  
    0.501
RC1_3920
TonB dependent receptor, putative; Identified by match to protein family HMM PF01011.
  
     0.472
RC1_0580
TonB-dependent receptor, putative; Identified by match to protein family HMM PF01063.
  
     0.461
RC1_1970
Hypothetical protein; Identified by Glimmer2 putative.
       0.455
RC1_3723
TonB-dependent receptor, putative.
  
     0.446
RC1_0326
TonB dependent receptor, putative; Identified by match to protein family HMM PF02283.
  
     0.442
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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