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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_1995R body protein, putative; Identified by match to protein family HMM PF00205 match to protein family HMM PF02775 match to protein family HMM PF02776 match to protein family HMM TIGR00118. (108 aa)    
Predicted Functional Partners:
RC1_1999
R body protein, putative; Identified by match to protein family HMM PF00702 match to protein family HMM TIGR00338 match to protein family HMM TIGR01488.
     
 0.743
RC1_1994
R body protein, putative; Identified by match to protein family HMM PF01842 match to protein family HMM TIGR00119.
 
    
0.675
RC1_1996
R body protein, putative.
 
    
0.485
RC1_1993
R body protein, putative.
      
0.429
RC1_3285
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF03060.
  
     0.404
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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