STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2004Conserved hypothetical protein; Identified by match to protein family HMM PF01145 match to protein family HMM TIGR01933. (157 aa)    
Predicted Functional Partners:
RC1_2141
Conserved hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.785
RC1_1858
Conserved hypothetical protein.
  
   
 0.777
RC1_2005
TfoX N-terminal domain protein; Identified by match to protein family HMM PF01883.
       0.767
RC1_1332
SmpA; Identified by match to protein family HMM PF03061 match to protein family HMM TIGR00369.
  
   
 0.731
RC1_2601
Conserved hypothetical protein; Identified by match to protein family HMM PF00165 match to protein family HMM PF02311 match to protein family HMM PF07883.
  
     0.687
lysS
TIGR00467 PF01921: lysyl-tRNA synthetase; With a good score above the trusted cutoff and characterized homologs; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.660
nadK
Inorganic polyphosphate/ATP-NAD kinase, putative; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.633
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
     0.630
holC
DNA polymerase III, chi subunit, HolC, putative; Identified by match to protein family HMM PF01066.
  
     0.620
RC1_0923
NADH:ubiquinone oxidoreductase subunit, putative; Identified by match to protein family HMM PF01322.
 
   
 0.617
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.