Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2011Hypothetical protein; Identified by Glimmer2 putative. (212 aa)    
Predicted Functional Partners:
RC1_0497
Conserved hypothetical protein; Identified by match to protein family HMM PF01458 match to protein family HMM TIGR01981.
 
  
 0.913
RC1_0496
Conserved hypothetical protein; Identified by match to protein family HMM PF00266 match to protein family HMM PF01212 match to protein family HMM TIGR01979.
 
     0.790
RC1_0498
Conserved hypothetical protein; Identified by match to protein family HMM PF00005 match to protein family HMM TIGR01978.
 
   
 0.777
RC1_1790
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.552
RC1_3409
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.552
RC1_3552
Protein prkA, putative; Identified by match to protein family HMM PF05013.
   
    0.539
RC1_0796
Identified by match to protein family HMM PF01656.
  
     0.535
RC1_0222
DNA-binding protein (HTH domain), putative; Identified by match to protein family HMM PF03240.
  
     0.524
RC1_3306
Conserved hypothetical protein; Identified by match to protein family HMM PF02798.
  
     0.523
RC1_0530
Conserved hypothetical protein; Identified by match to protein family HMM PF01053 match to protein family HMM PF01212.
  
     0.521
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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