Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2020Conserved hypothetical protein. (643 aa)    
Predicted Functional Partners:
RC1_2019
Conserved hypothetical protein.
 
     0.920
RC1_2018
Conserved hypothetical protein.
 
     0.686
yjfL
Inner membrane protein YjfL.
       0.605
RC1_2902
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.451
aspA
Aspartoacylase, putative; Identified by match to protein family HMM PF02446 match to protein family HMM TIGR00217.
  
     0.436
RC1_2022
Conserved hypothetical protein; Identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937.
       0.415
RC1_2023
Glutathionylspermidine synthase, putative; Identified by match to protein family HMM PF00303.
       0.415
RC1_3201
Conserved hypothetical protein; Identified by match to protein family HMM PF02152 match to protein family HMM TIGR00525 match to protein family HMM TIGR00526.
  
     0.410
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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