STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2056HlyD family secretion protein. (350 aa)    
Predicted Functional Partners:
RC1_2058
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00990 match to protein family HMM TIGR00254.
 
  
 0.959
RC1_2057
ABC transporter, ATP-binding protein, putative.
  
 0.958
macB-2
Macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.813
RC1_2055
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00015.
       0.799
cvaB
Colicin V secretion; PF00005 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02264.
  
 
 0.783
RC1_1160
Type I secretion outer membrane protein, TolC family; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 
 0.656
RC1_3728
ABC-2 type transporter, permease protein, putative; Identified by match to protein family HMM PF00158 match to protein family HMM PF01590 match to protein family HMM PF02954 match to protein family HMM PF07728 match to protein family HMM TIGR01817.
 
  
 0.637
RC1_2440
Outer membrane efflux lipoprotein, NodT family protein; Identified by match to protein family HMM PF01209.
 
 
 0.625
nodT
RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.625
RC1_3750
RND efflux system, outer membrane lipoprotein, NodT family.
 
 
 0.620
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.