STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2066Conserved hypothetical protein. (393 aa)    
Predicted Functional Partners:
RC1_1671
Aminopeptidase ES-62 precursor; PF04389 PF01546: Peptidase family M20.
  
     0.602
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.586
RC1_0402
TonB dependent receptor, putative; Identified by match to protein family HMM PF00440.
  
     0.572
RC1_0403
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00027.
  
     0.563
RC1_2065
2-hydroxychromene-2-carboxylate isomerase, putative.
       0.538
btuB-2
Vitamin B12 transporter btuB precursor, putative; Gene symbol synonyms.
  
     0.535
copA
TonB-dependent outer membrane receptor, putative; Copper-transporting P-type ATPase;identified by match to protein family HMM PF03927.
  
     0.513
RC1_2309
Aminopeptidase family M28, putative; PF04389 With a good score above the trusted cutoff and uncharacterized homologs.
  
     0.500
RC1_0600
Conserved hypothetical protein; Identified by match to protein family HMM PF00106 match to protein family HMM PF01370.
 
     0.493
RC1_2310
Aminopeptidase family M28, putative; PF04389 With a good score above the trusted cutoff and uncharacterized homologs; In the same cluster With other genes of the same family; identified by match to protein family HMM PF00989 match to protein family HMM PF00990 match to protein family HMM PF01590 match to protein family HMM TIGR00229 match to protein family HMM TIGR00254.
  
     0.488
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.