Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cstS3cstS3; Identified by match to protein family HMM TIGR03055. (655 aa)    
Predicted Functional Partners:
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
 
 
 0.989
cheY3
cheY3; Identified by match to protein family HMM PF02514 match to protein family HMM TIGR02025.
 
 
 0.987
RC1_3465
Sensory box histidine kinase; Contains PF00512, PF02518, PF00072, and TIGR00229.
 
 
 0.981
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
 
 0.977
RC1_3033
Sensor protein torS, putative.
  
 
 0.977
cstS1
cstS1; Identified by match to protein family HMM PF01243.
 
 
 0.976
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
 
 
 0.974
cheA3
Histidine Sensor Kinase CheA3; Frameshift reading error, two bases mis-inserted (annotation error).
 
 
 0.971
RC1_3342
Complexhybrid Signal Transduction Protein.
 
 
 0.971
hdpA
Hybrid phosphotransfer protein, HdpA; [contains] response regulator receiver domain; PAS domain S-box; identified by match to protein family HMM PF00072 match to protein family HMM PF01339.
  
 
 0.967
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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