Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cheW3bcheW3b; Identified by match to protein family HMM PF03967 match to protein family HMM TIGR01150. (200 aa)    
Predicted Functional Partners:
cheA3
Histidine Sensor Kinase CheA3; Frameshift reading error, two bases mis-inserted (annotation error).
 
 0.999
cheAY
Chemotaxis protein CheA (C terminus homologous to cheY); Also called histidine kinase; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786.
  
 0.994
cheA2
Chemotaxis protein CheA; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783.
 
 0.993
cheB3
Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.993
cheW3a
cheW3a; Identified by match to protein family HMM PF00142 match to protein family HMM TIGR01281.
    
 0.993
cheR3
Chemotaxis protein methyltransferase; Identified by match to protein family HMM PF03602 match to protein family HMM PF05175 match to protein family HMM PF07109 match to protein family HMM TIGR02021.
 
  
 0.983
RC1_3878
Chemotaxis protein methyltransferase, putative; Name variations include MCP methyltransferase.
 
 
 0.980
mcp3
Methyl-accepting chemotaxis protein.
 
 
 0.974
cheB2
Chemotaxis response regulator protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.969
aer-3
Aerotaxis sensor receptor Aer; Gene symbol synonym air.
 
 0.969
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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