Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cheY3cheY3; Identified by match to protein family HMM PF02514 match to protein family HMM TIGR02025. (135 aa)    
Predicted Functional Partners:
cstS3
cstS3; Identified by match to protein family HMM TIGR03055.
 
 
 0.987
cheA3
Histidine Sensor Kinase CheA3; Frameshift reading error, two bases mis-inserted (annotation error).
  
 
 0.973
cheW3b
cheW3b; Identified by match to protein family HMM PF03967 match to protein family HMM TIGR01150.
  
 
 0.945
cheW3a
cheW3a; Identified by match to protein family HMM PF00142 match to protein family HMM TIGR01281.
  
 
 0.945
cheB3
Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.936
RC1_3465
Sensory box histidine kinase; Contains PF00512, PF02518, PF00072, and TIGR00229.
  
 
 0.916
mcp3
Methyl-accepting chemotaxis protein.
  
 
 0.915
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
   
 
 0.872
cstS2
cstS2; Identified by match to protein family HMM PF01266 match to protein family HMM PF01593.
 
 
 
 0.816
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
 
 
 
 0.812
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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