Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2137Conserved hypothetical protein; Identified by match to protein family HMM PF02310. (130 aa)    
Predicted Functional Partners:
RC1_1957
Conserved hypothetical protein; Identified by match to protein family HMM PF00043 match to protein family HMM PF02798.
  
  
 0.722
ttuD
Hydroxypyruvate reductase, putative; [contains] MOFRL domain identified by match to protein family HMM PF07284 match to protein family HMM TIGR02020.
       0.664
RC1_2138
Hydrolase, putative; Identified by match to protein family HMM PF00989 match to protein family HMM PF02954 match to protein family HMM TIGR00229 match to protein family HMM TIGR02040.
       0.509
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00148 match to protein family HMM TIGR01279; Belongs to the pyruvate kinase family.
       0.481
RC1_1414
Probable ATPase; [contains]tetratricopeptide repeat identified by Glimmer2 putative.
    
 
 0.424
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
   0.401
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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