Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2138Hydrolase, putative; Identified by match to protein family HMM PF00989 match to protein family HMM PF02954 match to protein family HMM TIGR00229 match to protein family HMM TIGR02040. (284 aa)    
Predicted Functional Partners:
RC1_2139
Conserved hypothetical protein; Identified by match to protein family HMM PF00128 match to protein family HMM PF02446 match to protein family HMM PF02922 match to protein family HMM TIGR00217 match to protein family HMM TIGR02402 match to protein family HMM TIGR02457.
      0.854
RC1_1900
Conserved hypothetical protein.
  
     0.651
RC1_1862
Conserved hypothetical protein; Identified by match to protein family HMM PF01734.
  
     0.531
ttuD
Hydroxypyruvate reductase, putative; [contains] MOFRL domain identified by match to protein family HMM PF07284 match to protein family HMM TIGR02020.
       0.520
RC1_2137
Conserved hypothetical protein; Identified by match to protein family HMM PF02310.
       0.509
hutF
Formiminoglutamate deiminase.
     
  0.500
hexR
HTH-type transcriptional regulator hexR, putative; Part of the PF01418 identified by match to protein family HMM PF01212.
  
  
 0.483
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00148 match to protein family HMM TIGR01279; Belongs to the pyruvate kinase family.
     
 0.427
RC1_1330
Conserved hypothetical protein.
  
     0.415
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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