STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2139Conserved hypothetical protein; Identified by match to protein family HMM PF00128 match to protein family HMM PF02446 match to protein family HMM PF02922 match to protein family HMM TIGR00217 match to protein family HMM TIGR02402 match to protein family HMM TIGR02457. (116 aa)    
Predicted Functional Partners:
RC1_2138
Hydrolase, putative; Identified by match to protein family HMM PF00989 match to protein family HMM PF02954 match to protein family HMM TIGR00229 match to protein family HMM TIGR02040.
      0.854
moaB
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
 
    0.680
nadK
Inorganic polyphosphate/ATP-NAD kinase, putative; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.524
RC1_2140
Hypothetical protein; Identified by Glimmer2 putative.
       0.492
RC1_0539
Histidine triad protein, putative; Also called HIT family protein.
  
     0.462
ttuD
Hydroxypyruvate reductase, putative; [contains] MOFRL domain identified by match to protein family HMM PF07284 match to protein family HMM TIGR02020.
       0.435
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
   
    0.408
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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