STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2150Conserved hypothetical protein; Identified by match to protein family HMM PF01739 match to protein family HMM PF03705. (146 aa)    
Predicted Functional Partners:
glcE
Glycolate oxidase, subunit glcE; Identified by match to protein family HMM PF01584.
 
     0.800
glcD
Glycolate oxidase, subunit GlcD; Identified by match to protein family HMM PF00072.
       0.628
glcF
Glycolate oxidase, iron-sulfur subunit; Identified by match to protein family HMM PF01584.
 
     0.622
RC1_2526
Conserved hypothetical protein; Identified by match to protein family HMM PF01914 match to protein family HMM TIGR00427.
 
     0.531
mrpG
Na(+)/H(+) antiporter subunit G; [Synonyms] Multiple resistance and pH homeostasis protein G Mrp complex subunit G.
   
    0.483
RC1_2154
Hypothetical protein; Identified by Glimmer2 putative.
       0.460
RC1_2382
Conserved hypothetical protein; Identified by match to protein family HMM PF01210 match to protein family HMM PF02558 match to protein family HMM PF03807 match to protein family HMM PF07479.
 
     0.449
RC1_2031
Lipoprotein, putative.
 
     0.446
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.