Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2164Identified by match to protein family HMM PF01432 match to protein family HMM TIGR02290. (416 aa)    
Predicted Functional Partners:
RC1_2163
Conserved hypothetical protein.
       0.762
RC1_3561
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.661
RC1_3896
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.595
RC1_1839
Conserved hypothetical protein; Identified by match to protein family HMM PF01791.
  
     0.545
RC1_1400
Conserved hypothetical protein.
  
     0.530
RC1_4112
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.426
ggt
Gamma-glutamyltransferase; Identified by match to protein family HMM PF00355.
       0.423
RC1_2143
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00271.
  
     0.410
RC1_0599
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.404
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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