Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
katCatalase; Identified by match to protein family HMM PF00444 match to protein family HMM TIGR01022. (529 aa)    
Predicted Functional Partners:
ohr
Organic hydroperoxide resistance protein; Identified by match to protein family HMM PF01565 match to protein family HMM PF02913.
  
  
 0.912
katA
Catalase; Gene symbol synonym catA; identified by match to protein family HMM PF00430.
  
  
 
0.909
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
   
 
  0.904
fbaB
Fructose-bisphosphate aldolase, class I; Identified by match to protein family HMM PF00004 match to protein family HMM PF05491 match to protein family HMM PF05496 match to protein family HMM PF07728 match to protein family HMM TIGR00635.
   
    0.820
ahpC
Alkyl hydroperoxide reductase C; Identified by match to protein family HMM PF02669 match to protein family HMM TIGR00681.
  
 
 0.786
groS
Chaperonin GroS, putative; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
  
 
 0.741
RC1_0259
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF00582.
   
  0.692
RC1_2842
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF00587 match to protein family HMM PF02824 match to protein family HMM PF03129 match to protein family HMM PF07973 match to protein family HMM TIGR00418.
   
  0.692
RC1_3528
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF00036.
   
  0.692
RC1_3580
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF01569.
   
  0.692
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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